Tests run: 11, Failures: 4, Errors: 0, Skipped: 0, Time elapsed: 0.711 sec <<< FAILURE! - in org.phenotips.data.internal.MonarchPatientScorerTest getScoreSearchesRemotely(org.phenotips.data.internal.MonarchPatientScorerTest) Time elapsed: 0.71 sec <<< FAILURE! org.junit.ComparisonFailure: expected:<...%3A1%22%7D%2C%7B%22i[d%22%3A%22HP%3A2%22%2C%22isPresent%22%3Afalse]%7D%5D%7D> but was:<...%3A1%22%7D%2C%7B%22i[sPresent%22%3Afalse%2C%22id%22%3A%22HP%3A2%22]%7D%5D%7D> at org.phenotips.data.internal.MonarchPatientScorerTest.getScoreSearchesRemotely(MonarchPatientScorerTest.java:138) getScoreWithNoResponseReturnsNegative1(org.phenotips.data.internal.MonarchPatientScorerTest) Time elapsed: 0.708 sec <<< FAILURE! org.junit.ComparisonFailure: expected:<...%3A1%22%7D%2C%7B%22i[d%22%3A%22HP%3A2%22%2C%22isPresent%22%3Afalse]%7D%5D%7D> but was:<...%3A1%22%7D%2C%7B%22i[sPresent%22%3Afalse%2C%22id%22%3A%22HP%3A2%22]%7D%5D%7D> at org.phenotips.data.internal.MonarchPatientScorerTest.getScoreWithNoResponseReturnsNegative1(MonarchPatientScorerTest.java:169) getSpecificitySearchesRemotely(org.phenotips.data.internal.MonarchPatientScorerTest) Time elapsed: 0.707 sec <<< FAILURE! org.junit.ComparisonFailure: expected:<...%3A1%22%7D%2C%7B%22i[d%22%3A%22HP%3A2%22%2C%22isPresent%22%3Afalse]%7D%5D%7D> but was:<...%3A1%22%7D%2C%7B%22i[sPresent%22%3Afalse%2C%22id%22%3A%22HP%3A2%22]%7D%5D%7D> at org.phenotips.data.internal.MonarchPatientScorerTest.getSpecificitySearchesRemotely(MonarchPatientScorerTest.java:217) checkURLConfigurable(org.phenotips.data.internal.MonarchPatientScorerTest) Time elapsed: 0.674 sec <<< FAILURE! org.junit.ComparisonFailure: expected:<...%3A1%22%7D%2C%7B%22i[d%22%3A%22HP%3A2%22%2C%22isPresent%22%3Afalse]%7D%5D%7D> but was:<...%3A1%22%7D%2C%7B%22i[sPresent%22%3Afalse%2C%22id%22%3A%22HP%3A2%22]%7D%5D%7D> at org.phenotips.data.internal.MonarchPatientScorerTest.checkURLConfigurable(MonarchPatientScorerTest.java:274) Results : Failed tests: MonarchPatientScorerTest.checkURLConfigurable:274 expected:<...%3A1%22%7D%2C%7B%22i[d%22%3A%22HP%3A2%22%2C%22isPresent%22%3Afalse]%7D%5D%7D> but was:<...%3A1%22%7D%2C%7B%22i[sPresent%22%3Afalse%2C%22id%22%3A%22HP%3A2%22]%7D%5D%7D> MonarchPatientScorerTest.getScoreSearchesRemotely:138 expected:<...%3A1%22%7D%2C%7B%22i[d%22%3A%22HP%3A2%22%2C%22isPresent%22%3Afalse]%7D%5D%7D> but was:<...%3A1%22%7D%2C%7B%22i[sPresent%22%3Afalse%2C%22id%22%3A%22HP%3A2%22]%7D%5D%7D> MonarchPatientScorerTest.getScoreWithNoResponseReturnsNegative1:169 expected:<...%3A1%22%7D%2C%7B%22i[d%22%3A%22HP%3A2%22%2C%22isPresent%22%3Afalse]%7D%5D%7D> but was:<...%3A1%22%7D%2C%7B%22i[sPresent%22%3Afalse%2C%22id%22%3A%22HP%3A2%22]%7D%5D%7D> MonarchPatientScorerTest.getSpecificitySearchesRemotely:217 expected:<...%3A1%22%7D%2C%7B%22i[d%22%3A%22HP%3A2%22%2C%22isPresent%22%3Afalse]%7D%5D%7D> but was:<...%3A1%22%7D%2C%7B%22i[sPresent%22%3Afalse%2C%22id%22%3A%22HP%3A2%22]%7D%5D%7D> Tests run: 36, Failures: 4, Errors: 0, Skipped: 0 [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] PhenoTips - Parent POM ............................. SUCCESS [ 37.542 s] [INFO] PhenoTips - Resource packages ...................... SUCCESS [ 0.234 s] [INFO] PhenoTips - Jetty .................................. SUCCESS [ 0.273 s] [INFO] PhenoTips - Jetty Lifecycle Listener - Log Writer .. SUCCESS [ 36.592 s] [INFO] PhenoTips - Jetty Lifecycle Listener - Open Browser SUCCESS [ 36.106 s] [INFO] PhenoTips - Jetty Resources ........................ SUCCESS [ 6.888 s] [INFO] PhenoTips - Solr configuration files ............... SUCCESS [ 19.947 s] [INFO] PhenoTips - Various Java components ................ SUCCESS [ 35.884 s] [INFO] PhenoTips - Default administrative account and default rights SUCCESS [ 37.451 s] [INFO] PhenoTips - Joda Time Script Service ............... SUCCESS [ 38.161 s] [INFO] PhenoTips - UI Widgets ............................. SUCCESS [ 36.063 s] [INFO] PhenoTips - UI Widgets - Documents providing various widgets SUCCESS [ 53.092 s] [INFO] PhenoTips - Skin ................................... SUCCESS [ 35.952 s] [INFO] PhenoTips - Skin - Documents providing the custom Skin SUCCESS [ 42.874 s] [INFO] PhenoTips - General navigation ..................... SUCCESS [ 36.009 s] [INFO] PhenoTips - Navigation - Java APIs ................. SUCCESS [ 36.123 s] [INFO] PhenoTips - OBO to Solr conversion ................. SUCCESS [ 0.460 s] [INFO] PhenoTips - Data model constants ................... SUCCESS [ 36.332 s] [INFO] XWiki Platform - Core - Users - Parent POM ......... SUCCESS [ 35.999 s] [INFO] XWiki Platform - Core - Users - API ................ SUCCESS [ 39.568 s] [INFO] PhenoTips - Patient data ........................... SUCCESS [ 36.060 s] [INFO] PhenoTips - Patient data - Java APIs ............... SUCCESS [ 39.204 s] [INFO] PhenoTips - Vocabularies ........................... SUCCESS [ 36.011 s] [INFO] PhenoTips - Vocabularies - APIs .................... SUCCESS [37:13 min] [INFO] PhenoTips - Vocabularies - Human Phenotype Ontology integration SUCCESS [ 36.109 s] [INFO] PhenoTips - Vocabularies - Human Phenotype Ontology integration - APIs SUCCESS [ 44.368 s] [INFO] PhenoTips - Vocabularies - Human Phenotype Ontology integration - Documents providing HPO services SUCCESS [ 46.052 s] [INFO] PhenoTips - Vocabularies - Online Mendelian Inheritance in Man integration SUCCESS [ 36.105 s] [INFO] PhenoTips - Vocabularies - Online Mendelian Inheritance in Man integration - APIs SUCCESS [ 42.098 s] [INFO] PhenoTips - Vocabularies - Online Mendelian Inheritance in Man integration - Documents providing services SUCCESS [ 43.601 s] [INFO] PhenoTips - Vocabularies - HUGO Gene Nomenclature Committee (GeneNames) integration SUCCESS [ 36.133 s] [INFO] PhenoTips - Vocabularies - HUGO Gene Nomenclature Committee (GeneNames) integration - APIs SUCCESS [ 46.450 s] [INFO] PhenoTips - Vocabularies - HUGO Gene Nomenclature Committee (GeneNames) integration - Documents providing services SUCCESS [ 43.529 s] [INFO] PhenoTips - Solr Access Service .................... SUCCESS [ 36.099 s] [INFO] PhenoTips - Solr Access Service - Java code ........ SUCCESS [ 45.601 s] [INFO] PhenoTips - Solr Access Service - Documents providing phenotype and disease suggestions SUCCESS [ 42.630 s] [INFO] PhenoTips - Component Manager Registry ............. SUCCESS [ 41.239 s] [INFO] PhenoTips - Application configuration .............. SUCCESS [ 36.239 s] [INFO] PhenoTips - Application configuration - Java APIs .. SUCCESS [ 44.716 s] [INFO] PhenoTips - Patient data - Default implementation for the Java APIs SUCCESS [02:23 min] [INFO] XWiki Translation Manager .......................... SUCCESS [ 36.558 s] [INFO] PhenoTips - Various Tools .......................... SUCCESS [ 32.958 s] [INFO] PhenoTips - Patient data - Documents providing the patient class, sheet and display code SUCCESS [ 57.334 s] [INFO] PhenoTips - Users and Groups ....................... SUCCESS [ 35.987 s] [INFO] PhenoTips - Users and Groups - Wiki Documents ...... SUCCESS [ 36.079 s] [INFO] PhenoTips - Application configuration - Documents providing the configuration classes and their display code SUCCESS [ 36.433 s] [INFO] PhenoTips - Patient access rules ................... SUCCESS [ 35.973 s] [INFO] PhenoTips - Patient access rules - Wiki Documents .. SUCCESS [ 35.999 s] [INFO] PhenoTips - Navigation - Documents providing the homepage and the All Data page SUCCESS [ 46.436 s] [INFO] PhenoTips - User - Profile - UI .................... SUCCESS [ 44.302 s] [INFO] PhenoTips - Data export ............................ SUCCESS [ 36.733 s] [INFO] PhenoTips - Data export - Spreadsheet Export APIs .. SUCCESS [ 54.083 s] [INFO] PhenoTips - Data export - Documents providing the Export functionality SUCCESS [ 45.156 s] [INFO] PhenoTips - Patient measurements ................... SUCCESS [ 36.178 s] [INFO] PhenoTips - Patient measurements - Java APIs ....... SUCCESS [ 44.277 s] [INFO] PhenoTips - Patient measurements - Documents providing the measurements functionality in the UI SUCCESS [ 40.150 s] [INFO] PhenoTips - Studies ................................ SUCCESS [ 35.770 s] [INFO] PhenoTips - Studies - Java APIs .................... SUCCESS [ 36.362 s] [INFO] PhenoTips - Studies - Wiki Documents ............... SUCCESS [ 36.570 s] [INFO] PhenoTips - Vocabularies - Documents providing the patient class, sheet and display code SUCCESS [ 36.022 s] [INFO] PhenoTips - Patient data sharing ................... SUCCESS [ 0.264 s] [INFO] PhenoTips - Patient data sharing - Communication Protocol Details SUCCESS [ 0.648 s] [INFO] PhenoTips - Patient data sharing - Secure data storage API SUCCESS [ 4.019 s] [INFO] PhenoTips - Patient data sharing - Push Java APIs .. SUCCESS [ 10.144 s] [INFO] PhenoTips - Patient data sharing - Push Configuration UI SUCCESS [ 8.885 s] [INFO] PhenoTips - Specificity Meter ...................... SUCCESS [ 36.110 s] [INFO] PhenoTips - Specificity Meter - Documents providing the UI SUCCESS [ 35.239 s] [INFO] PhenoTips - Diagnosis Suggestion Service ........... SUCCESS [ 36.042 s] [INFO] PhenoTips - Diagnosis Suggestion Java Code ......... SUCCESS [ 50.883 s] [INFO] PhenoTips - Diagnosis Suggestion- Documents providing phenotype and disease suggestions SUCCESS [ 43.712 s] [INFO] XWiki Platform - SVG tools ......................... SUCCESS [ 37.338 s] [INFO] PhenoTips - Pedigree ............................... SUCCESS [ 36.058 s] [INFO] PhenoTips - Pedigree - Application Documents ....... SUCCESS [ 25.891 s] [INFO] PhenoTips - Application interface .................. SUCCESS [ 11.314 s] [INFO] PhenoTips - Pedigree - JS and CSS Resources ........ SUCCESS [ 34.394 s] [INFO] PhenoTips - Base War package ....................... SUCCESS [ 9.256 s] [INFO] PhenoTips - Widget - Java APIs ..................... SUCCESS [ 23.549 s] [INFO] PhenoTips - Skin - Java APIs ....................... SUCCESS [ 23.115 s] [INFO] PhenoTips - Patient data - Page Objects ............ SUCCESS [ 3.112 s] [INFO] PhenoTips - Navigation - Testing Page Objects ...... SUCCESS [ 2.152 s] [INFO] PhenoTips - Security ............................... SUCCESS [ 23.011 s] [INFO] PhenoTips - Security - Authorization APIs .......... SUCCESS [ 30.960 s] [INFO] PhenoTips - Patient Data - REST services ........... SUCCESS [ 32.975 s] [INFO] PhenoTips - Vocabularies - REST services ........... SUCCESS [ 29.701 s] [INFO] PhenoTips - Vocabularies - Chemical Entities of Biological Interest SUCCESS [ 22.953 s] [INFO] PhenoTips - Vocabularies - Chemical Entities of Biological Interest integration - APIs SUCCESS [ 57.188 s] [INFO] PhenoTips - Vocabularies - Ethnicity Ontology integration SUCCESS [ 23.233 s] [INFO] PhenoTips - Vocabularies - Ethnicity Ontology integration - APIs SUCCESS [ 28.737 s] [INFO] PhenoTips - Patient data - Data migrations ......... SUCCESS [ 29.556 s] [INFO] PhenoTips - Users and Groups - Java APIs ........... SUCCESS [ 31.515 s] [INFO] PhenoTips - Patient access rules - Java APIs ....... SUCCESS [ 8.896 s] [INFO] PhenoTips - Patient data - Solr indexing ........... SUCCESS [ 33.451 s] [INFO] PhenoTips - Extra fields for patient data .......... SUCCESS [ 23.571 s] [INFO] PhenoTips - Extra fields for patient data - Medication SUCCESS [ 23.141 s] [INFO] PhenoTips - Extra fields for patient data - Medication - Java APIs SUCCESS [ 31.015 s] [INFO] PhenoTips - Extra fields for patient data - Medication - Documents providing the medication data class and display code SUCCESS [ 26.649 s] [INFO] PhenoTips - Security - Bridge between the old XWiki security interfaces and the new security components SUCCESS [ 30.992 s] [INFO] PhenoTips - Patient access rules - Migrations ...... SUCCESS [ 31.723 s] [INFO] PhenoTips - Patient data sharing - Receiver Java APIs SUCCESS [ 8.680 s] [INFO] PhenoTips - Patient data sharing - Receiver UI ..... SUCCESS [ 7.585 s] [INFO] PhenoTips - Patient measurements - Data migrations . SUCCESS [ 27.272 s] [INFO] XWiki Platform - Core - Users - Wiki ............... SUCCESS [ 26.000 s] [INFO] PhenoTips - Application configuration - Data migrations SUCCESS [ 26.488 s] [INFO] PhenoTips - Storage migrator ....................... SUCCESS [ 22.985 s] [INFO] PhenoTips - Storage migrators - Java APIs .......... SUCCESS [ 30.497 s] [INFO] PhenoTips - Storage migrators - Attachments ........ SUCCESS [ 23.094 s] [INFO] PhenoTips - Storage migrators - Attachments - DataBase store SUCCESS [ 29.605 s] [INFO] PhenoTips - Storage migrators - Attachments - Filesystem store SUCCESS [ 40.852 s] [INFO] PhenoTips - Storage migrators - Attachments - Generic migrator SUCCESS [ 40.454 s] [INFO] PhenoTips - NCBI eUtils Services ................... SUCCESS [ 36.181 s] [INFO] PhenoTips - NCBI eUtils Services - Java APIs ....... SUCCESS [ 0.582 s] [INFO] PhenoTips - NCBI eUtils Services - Documents providing PubMed relevant articles suggestions SUCCESS [ 36.220 s] [INFO] PhenoTips - Specificity Meter - Java APIs .......... FAILURE [ 8.282 s] [INFO] PhenoTips - Pedigree - Java APIs ................... SKIPPED [INFO] PhenoTips - Misc - Support for proxy authentication SKIPPED [INFO] PhenoTips - Record Locking ......................... SKIPPED [INFO] PhenoTips - Record Locking - API ................... SKIPPED [INFO] PhenoTips - Record Locking - UI - Documents providing record locking functionality SKIPPED [INFO] PhenoTips - Distribution packages .................. SKIPPED [INFO] PhenoTips - HSQLDB Database ........................ SKIPPED [INFO] PhenoTips - War package ............................ SKIPPED [INFO] PhenoTips - Standalone Distribution ................ SKIPPED [INFO] PhenoTips - DMG Distribution ....................... SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 01:37 h [INFO] Finished at: 2016-01-13T14:09:29-07:00 [INFO] Final Memory: 146M/1863M [INFO] ------------------------------------------------------------------------ [ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.19:test (default-test) on project specificity-meter-api: There are test failures. [ERROR] [ERROR] Please refer to /home/alex/workspace/phenotips/components/specificity-meter/api/target/surefire-reports for the individual test results. [ERROR] -> [Help 1] org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.19:test (default-test) on project specificity-meter-api: There are test failures. Please refer to /home/alex/workspace/phenotips/components/specificity-meter/api/target/surefire-reports for the individual test results. at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:212) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:116) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:80) at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build(SingleThreadedBuilder.java:51) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:128) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:307) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:193) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:106) at org.apache.maven.cli.MavenCli.execute(MavenCli.java:863) at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:288) at org.apache.maven.cli.MavenCli.main(MavenCli.java:199) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:497) at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:289) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:229) at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:415) at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:356) Caused by: org.apache.maven.plugin.MojoFailureException: There are test failures. Please refer to /home/alex/workspace/phenotips/components/specificity-meter/api/target/surefire-reports for the individual test results. at org.apache.maven.plugin.surefire.SurefireHelper.reportExecution(SurefireHelper.java:91) at org.apache.maven.plugin.surefire.SurefirePlugin.handleSummary(SurefirePlugin.java:318) at org.apache.maven.plugin.surefire.AbstractSurefireMojo.executeAfterPreconditionsChecked(AbstractSurefireMojo.java:880) at org.apache.maven.plugin.surefire.AbstractSurefireMojo.execute(AbstractSurefireMojo.java:739) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:134) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:207) ... 20 more [ERROR] [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException [ERROR] [ERROR] After correcting the problems, you can resume the build with the command [ERROR] mvn -rf :specificity-meter-api