Release Notes - PhenoTips - Version 1.4-rc-1 - HTML format

Sub-task

  • [PT-3712] - Add a generic "search by example" method for retrieving events to the AuditStore
  • [PT-3713] - Add methods for counting events that match specified criteria the AuditStore
  • [PT-3715] - Rest endpoint for accessing and filtering audit events
  • [PT-3722] - New administration section for accessing audit logs

Bug

  • [PT-2091] - User profile's setting label and icon are overlapped
  • [PT-2134] - When creating a new patient within pedigree editor, the system does not ask if the patient is a part of a study
  • [PT-2850] - In pedigree, unlinked patients may lose data entered in cancers tab
  • [PT-3041] - Out of number of records is misplaced past first page
  • [PT-3523] - Difficult to click on patient link in Pedigree Editor in some cases
  • [PT-3530] - "Delete all" button deletes only one of the abnormalities in pedigree editor
  • [PT-3600] - Autocomplete/suggest inputs in the pedigree node popover retain input between different nodes
  • [PT-3674] - When removing genes from a person in pedigree editor, all associated gene variants need to be removed too
  • [PT-3680] - Patient info lost after pedigree JSON import
  • [PT-3700] - Broken homepage displayed after upgrading from older versions
  • [PT-3701] - Clicking on the creation date from records on the homepage leads to a Not Found page
  • [PT-3703] - The "required" flag is ignored when a patient record is populated from the pedigree
  • [PT-3704] - The id uniqueness is not checked when a patient record is populated from the pedigree editor
  • [PT-3705] - On "quit-and-save" pedigree complains that a family has no members if all members are unlinked
  • [PT-3706] - Measurements don't work for non-admin users
  • [PT-3707] - In pedigree, group nodes (n-person nodes) should not be highlighted as a valid drag target for linking patient records
  • [PT-3708] - Automatic layout may leave pedigree in an un-saveable un-exportable state
  • [PT-3710] - Pedigree import should not import patient records which are not already in the family, but keep those who are
  • [PT-3716] - Import/export functionality in pedigree does not handle group of people
  • [PT-3718] - Pedigree editor should warn user about unsaved changes before closing
  • [PT-3726] - Eliminate possibility of unintended patient record link clicks in pedigree editor
  • [PT-3727] - Undo/redo functionality in pedigree editor may misbehave when un-linked patients are involved
  • [PT-3729] - Unable to remove pedigree node linked to the current patient in pedigree editor
  • [PT-3731] - Non-admin users see uninterpreted code instead of the default workgroup image
  • [PT-3736] - "Create new patient" button doesn't work after being prompted to save changes
  • [PT-3738] - $services.groups.getGroupsForUser returns just a few of the user's workgroups
  • [PT-3743] - If DOB are marked as required only year of birth will be enforced
  • [PT-3746] - Passing a group to EntityAccessManager.isAdministrator triggers an XWiki permissions cache bug
  • [PT-3748] - Unable to transfer ownership to another user or group in a certain situation
  • [PT-3749] - Saving and loading pedigree may fail if current user has no view rights for some of the patients in the family
  • [PT-3752] - Pedigree editor does not prompt for save if patient is added to an existing family and left unliked
  • [PT-3761] - Unable to save pedigree nor export it into PhenoTips JSON format
  • [PT-3762] - Patients added to a family with no pedigree outside of pedigree editor do not show up when pedigree is created

New Feature

  • [PT-3711] - Administrators can browse and filter audited events

Task

  • [PT-3522] - Translate SUGGESTIONS FROM CLINICAL NOTES
  • [PT-3709] - Update add-to-family API to also modify pedigree JSON
  • [PT-3723] - Move the xdocuments related to consents into the consents module
  • [PT-3734] - Do not store meaningless events in audit logs

Improvement

  • [PT-3498] - Modify "Update consents" button label to read "Update"
  • [PT-3581] - Prevent opening same patient/family in multiple tabs from pedigree editor and patient form
  • [PT-3671] - User and group search rest service should be case insensitive
  • [PT-3672] - Users and groups suggest service should also return results where the input matches the human readable name, not only id
  • [PT-3683] - Modify colour of "Affected" status to a darker one (#999999)
  • [PT-3717] - Show internal/external family ID under Family history according to configuration for IDs from Administration: Data formats
  • [PT-3720] - Move SHOW EXTERNAL IDENTIFIERS... to the Admin's External ID configuration page
  • [PT-3724] - Remove two extra spaces in front of form title
  • [PT-3728] - Pedigree editor does not respect "show external ID instead of internal" setting in PhenoTips
  • [PT-3741] - Display group title in the suggest group element
  • [PT-3742] - Add uniqueness ID check configuration to Administration
  • [PT-3753] - Display family members by default
  • [PT-3754] - Display Suggested Genes section by default

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