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Bug
Gestational age in pedigree isn't saved
Unassigned
Orion Buske
Major
Fixed
Aug 20, 2019
Jun 14, 2020
Improvement
Improve handling of non-standard GEDCOM files
Unassigned
Daniel Gross
Medium
Done
Jul 12, 2019
Jul 12, 2019
Bug
Pedigree editor triggers cross-origin frame errors when launched in an iframe
Unassigned
Daniel Gross
Medium
Fixed
Jul 12, 2019
Jul 12, 2019
Bug
Some unit tests under org.phenotips.security fail due to cpu speed dependency
Unassigned
Sebastian Stanisor
Medium
Fixed
Jul 12, 2019
Jul 12, 2019
Bug
The list of phenotype suggestions may no longer include the exact match for a term
Unassigned
Matthew Osmond
Medium
Cannot Reproduce
Jul 2, 2019
Aug 27, 2019
Bug
It is impossible to set an individual in the pedigree as "Aborted", "Stillborn", "Miscarried", or "Unborn"
Unassigned
Marta Girdea
Medium
Duplicate
Jun 11, 2019
Jun 11, 2019
Bug
In the pedigree editor, cancer labels are sometimes vertically offset from the relevant individual
Unassigned
Daniel Gross
Medium
Fixed
Jun 6, 2019
Jun 17, 2019
Task
Improve comment field behavior in IE11 in pedigree editor
Unassigned
Daniel Gross
Medium
Fixed
Jun 3, 2019
Jun 17, 2019
Bug
Pedigree node life status not loaded from saved JSON
Unassigned
Orion Buske
Major
Fixed
May 31, 2019
Dec 31, 2019
Bug
PhenoType suggestions are no longer available
Unassigned
Sasha Andjic
Medium
Fixed
May 13, 2019
May 14, 2019
Bug
Tooltips width is too narrow for genes dropdown
Unassigned
Veronika Koltunova
Medium
Fixed
May 9, 2019
May 10, 2019
Bug
Every migrator that queries properties directly should clear cache at the end
Unassigned
Sasha Andjic
Major
Fixed
May 7, 2019
May 14, 2019
Bug
Patient Solr index should include ENS IDs and not gene names in the index
Unassigned
Andrew Misyura
Medium
Fixed
May 6, 2019
May 14, 2019
Sub-task
Empty PubMedID are found after PhenoTips 1.3.10 upgrade to 1.4.6
Unassigned
Sasha Andjic
Major
Fixed
May 3, 2019
May 14, 2019
Bug
Reindexing HPO fails when an HPO term has more than one single value type field
Unassigned
Sasha Andjic
Medium
Fixed
May 2, 2019
May 15, 2019
Improvement
Add the ability to set the livetable backend to a custom url
Unassigned
Sergiu Dumitriu
Medium
Fixed
Apr 26, 2019
Apr 26, 2019
Improvement
Allow translation files to be written in legible UTF-8 characters instead of unicode escapes
Unassigned
Sergiu Dumitriu
Medium
Fixed
Apr 26, 2019
Apr 26, 2019
Bug
Font of the selected study turns white when in edit mode
Unassigned
Sasha Andjic
Minor
Duplicate
Apr 25, 2019
Apr 25, 2019
Bug
After visiting or while pressing a "secondary action" link, the text becomes white and therefore unreadable in the default color theme
Unassigned
Marta Girdea
Medium
Fixed
Apr 25, 2019
Apr 26, 2019
Bug
Study descriptions are not rendered in the study selection dialog
Unassigned
Marta Girdea
Medium
Fixed
Apr 24, 2019
Apr 26, 2019
Bug
Filtering by collaborator is not working in a workgroup's "Shared cases" tab
Unassigned
Sasha Andjic
Minor
Fixed
Apr 16, 2019
Apr 18, 2019
Bug
Matchable visibility is undefined on detailed access rights table
Unassigned
Brian Li
Medium
Fixed
Apr 15, 2019
Apr 16, 2019
Bug
Incorrect access rights shown in UI
Unassigned
Sasha Andjic
Medium
Fixed
Apr 15, 2019
Apr 17, 2019
Bug
BOADICEA export breaks if an individual has a date of death specified without a year
Unassigned
Daniel Gross
Medium
Fixed
Apr 5, 2019
Apr 17, 2019
Bug
If a gene name contains a colon Solr queries searching for the gene fail
Unassigned
Andrew Misyura
Medium
Fixed
Apr 1, 2019
Apr 17, 2019
Bug
Modifying a group name is not reflected on patient/match table
Unassigned
Brian Li
Minor
Fixed
Mar 22, 2019
Apr 18, 2019
Bug
SolvedData throws NullPointerException on JSON import
Unassigned
Veronika Koltunova
Medium
Fixed
Mar 21, 2019
Mar 22, 2019
Bug
Fetch correct group name in owner contact provider
Unassigned
Veronika Koltunova
Medium
Fixed
Mar 20, 2019
Mar 22, 2019
Task
PhenoTips 1.4.x builds have two batik versions present (1.8 and 1.10)
Unassigned
Alina Gvo
Medium
Fixed
Mar 15, 2019
Mar 19, 2019
Bug
Quotes in user's name break the pedigree editor
Unassigned
Sergiu Dumitriu
Medium
Fixed
Mar 14, 2019
Mar 18, 2019
Bug
The pedigree patient form section can cause configurations for other parts of the form to stop working
Unassigned
Daniel Gross
Major
Fixed
Mar 14, 2019
Mar 19, 2019
Bug
Exception thrown when trying to upgrade to 1.4.5
Unassigned
Sergiu Dumitriu
Medium
Fixed
Mar 14, 2019
Mar 14, 2019
Sub-task
Usernames on comments not displaying properly
Unassigned
Brian Li
Trivial
Fixed
Mar 12, 2019
Mar 19, 2019
Bug
"Tested Negative/Rejected Candidate" Gene breaks Pedigree Editor
Unassigned
Brian Li
Medium
Fixed
Mar 7, 2019
Mar 11, 2019
Improvement
Re-position Suggested Genes relatively to the Genotype information section in the Patient record form
Unassigned
Sasha Andjic
Medium
Fixed
Feb 28, 2019
Mar 12, 2019
Task
Upgrade Solr to 7.7.0
Unassigned
Sergiu Dumitriu
Medium
Fixed
Feb 27, 2019
Mar 19, 2019
Bug
Reindexing ORDO fails
Unassigned
Sergiu Dumitriu
Medium
Fixed
Feb 27, 2019
Feb 28, 2019
Bug
Unable to delete gene in a certain situation
Unassigned
Sasha Andjic
Major
Duplicate
Feb 22, 2019
Feb 22, 2019
Bug
Gene deletion on the patient form may delete incorrect genes
Unassigned
Andrew Misyura
Major
Fixed
Feb 22, 2019
Jul 4, 2019
Sub-task
Implement an event listener that cleans up leading and trailing spaces and ensures the prefix "c." is lowercase in variants' cDNA field when data is saved
Unassigned
Marta Girdea
Medium
Fixed
Feb 15, 2019
Jul 25, 2019
Sub-task
Write a migrator to clean up leading and trailing spaces and to ensure the prefix "c." is lowercase in variants' cDNA field
Unassigned
Marta Girdea
Medium
Fixed
Feb 15, 2019
Jul 25, 2019
Bug
When a patient is imported via JSON an empty PubmedID is not discarded
Unassigned
Andrew Misyura
Minor
Fixed
Feb 14, 2019
Mar 21, 2019
Bug
The variant's cDNA field may contain extra spaces and wrong prefixes
Unassigned
Sasha Andjic
Medium
Fixed
Feb 11, 2019
Mar 4, 2019
Improvement
Profile urls should be generated on the backend
Unassigned
Veronika Koltunova
Medium
Fixed
Feb 7, 2019
Mar 21, 2019
Improvement
Add URL to contact providers
Unassigned
Veronika Koltunova
Minor
Fixed
Feb 6, 2019
Mar 19, 2019
Improvement
Include whitespace separator in parsing multiple emails in ContactInfo
Unassigned
Veronika Koltunova
Medium
Fixed
Feb 6, 2019
Feb 7, 2019
Bug
Solr does not index patients until a full reindex is executed
Unassigned
Andrew Misyura
Medium
Fixed
Jan 31, 2019
Feb 21, 2019
Bug
In the patients directory, filter values containing "[" cause an exception in HSQLDB and Derby backends
Unassigned
Brian Li
Minor
Fixed
Jan 17, 2019
Jan 20, 2019
Bug
Patient records entered in PhenoTips <1.4rc2 that has been upgraded to a version >= 1.4rc2 may have an empty PubMed ID
Unassigned
Veronika Koltunova
Major
Fixed
Jan 16, 2019
Feb 15, 2019
Bug
Infantile/childhood/juvenile onsets disappeared from Global age of onset field
Unassigned
Orion Buske
Medium
Fixed
Jan 9, 2019
Feb 8, 2019
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