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Bug
Group managers can add a non-existent user to their work group
Unassigned
Sasha Andjic
Major
Unresolved
Dec 30, 2019
Dec 30, 2019
Bug
Pedigree editor's patient creation omits consents
Unassigned
Sasha Andjic
Medium
Unresolved
Dec 17, 2019
Dec 17, 2019
Bug
JSON controllers may poison XWiki cache
Unassigned
Andrew Misyura
Major
Unresolved
Dec 17, 2019
Jan 8, 2020
Bug
PatientTemplate is missing genetic_notes field
Unassigned
Andrew Misyura
Major
Unresolved
Dec 17, 2019
Jan 10, 2020
Task
Incorporate HPO terms commonly used by SickKids Stroke Team
Unassigned
Meredith Gillespie
Minor
Unresolved
Nov 7, 2019
Nov 17, 2019
Task
Remove AppData/Roaming folder for Windows
Unassigned
Orion Buske
Medium
Unresolved
Aug 26, 2019
Aug 26, 2019
Bug
Gestational age in pedigree isn't saved
Unassigned
Orion Buske
Major
Fixed
Aug 20, 2019
Jun 14, 2020
Improvement
Pin down FILTERS panel across entire application
Unassigned
Sasha Andjic
Minor
Unresolved
Aug 9, 2019
Aug 9, 2019
Task
Merge BOADICEA export changes into stable-1.4.x
Unassigned
Daniel Gross
Medium
Unresolved
Jul 19, 2019
Jul 19, 2019
Improvement
Improve handling of non-standard GEDCOM files
Unassigned
Daniel Gross
Medium
Done
Jul 12, 2019
Jul 12, 2019
Bug
Pedigree editor triggers cross-origin frame errors when launched in an iframe
Unassigned
Daniel Gross
Medium
Fixed
Jul 12, 2019
Jul 12, 2019
Bug
Some unit tests under org.phenotips.security fail due to cpu speed dependency
Unassigned
Sebastian Stanisor
Medium
Fixed
Jul 12, 2019
Jul 12, 2019
Task
Push functionality no longer needs to have owner of the remote records option
Unassigned
Sasha Andjic
Medium
Unresolved
Jul 4, 2019
Jul 4, 2019
Bug
The list of phenotype suggestions may no longer include the exact match for a term
Unassigned
Matthew Osmond
Medium
Cannot Reproduce
Jul 2, 2019
Aug 27, 2019
Bug
Quicksave bypasses all form validation
Unassigned
Orion Buske
Major
Unresolved
Jun 20, 2019
Jun 20, 2019
Task
Discuss improving user experience when defining permission defaults
Unassigned
Sasha Andjic
Medium
Unresolved
Jun 14, 2019
Jun 14, 2019
Bug
It is impossible to set an individual in the pedigree as "Aborted", "Stillborn", "Miscarried", or "Unborn"
Unassigned
Marta Girdea
Medium
Duplicate
Jun 11, 2019
Jun 11, 2019
Bug
In the pedigree editor, cancer labels are sometimes vertically offset from the relevant individual
Unassigned
Daniel Gross
Medium
Fixed
Jun 6, 2019
Jun 17, 2019
Task
Improve comment field behavior in IE11 in pedigree editor
Unassigned
Daniel Gross
Medium
Fixed
Jun 3, 2019
Jun 17, 2019
Bug
Pedigree node life status not loaded from saved JSON
Unassigned
Orion Buske
Major
Fixed
May 31, 2019
Dec 31, 2019
Bug
Hierarchy arrow misbehaving for "Autosomal recessive inheritance"
Unassigned
Colin Joseph
Medium
Unresolved
May 29, 2019
May 30, 2019
Story
Add ability to use MONDO terms for diagnoses
Unassigned
Orion Buske
Medium
Unresolved
May 28, 2019
May 28, 2019
Bug
Some phenotype data may be lost when switching studies for patient
Unassigned
Alina Gvo
Medium
Unresolved
May 27, 2019
May 27, 2019
Bug
Work groups: Group.png seems to be missing
Unassigned
Sasha Andjic
Trivial
Unresolved
May 15, 2019
May 15, 2019
Improvement
Either modify tooltip wording or remove the tooltip from the "i" button of the patient's access rights dialog
Unassigned
Sasha Andjic
Trivial
Unresolved
May 15, 2019
May 15, 2019
Improvement
In PDF export display PubMed description
Unassigned
Sasha Andjic
Trivial
Unresolved
May 15, 2019
May 15, 2019
Bug
When assigning a patient to a twin node in pedigree the twin status gets lost, and pedigree editor may crash
Unassigned
Sasha Andjic
Medium
Unresolved
May 15, 2019
Jun 17, 2019
Bug
Clicking on EDIT DETAILS button in the phenotypes CURRENT SELECTION while being logged out makes patient form constantly try and fail with an error msg
Unassigned
Sasha Andjic
Minor
Unresolved
May 15, 2019
May 15, 2019
Bug
PhenoType suggestions are no longer available
Unassigned
Sasha Andjic
Medium
Fixed
May 13, 2019
May 14, 2019
Improvement
Enable Additional files section
Unassigned
Sasha Andjic
Medium
Unresolved
May 13, 2019
May 13, 2019
Improvement
Add ability to deposit excel files to the Additional files section of the Patient form
Unassigned
Sasha Andjic
Medium
Unresolved
May 13, 2019
May 13, 2019
Bug
Tooltips width is too narrow for genes dropdown
Unassigned
Veronika Koltunova
Medium
Fixed
May 9, 2019
May 10, 2019
Bug
Every migrator that queries properties directly should clear cache at the end
Unassigned
Sasha Andjic
Major
Fixed
May 7, 2019
May 14, 2019
Bug
Patient Solr index should include ENS IDs and not gene names in the index
Unassigned
Andrew Misyura
Medium
Fixed
May 6, 2019
May 14, 2019
Sub-task
Empty PubMedID are found after PhenoTips 1.3.10 upgrade to 1.4.6
Unassigned
Sasha Andjic
Major
Fixed
May 3, 2019
May 14, 2019
Bug
Reindexing HPO fails when an HPO term has more than one single value type field
Unassigned
Sasha Andjic
Medium
Fixed
May 2, 2019
May 15, 2019
Sub-task
Rework the way Genotype information is displayed in the node menu to avoid unnecessary clutter
Unassigned
Marta Girdea
Medium
Unresolved
Apr 30, 2019
Apr 30, 2019
Improvement
Better presentation of carrier gene status in the pedigree editor
Unassigned
Marta Girdea
Medium
Unresolved
Apr 29, 2019
May 14, 2019
Sub-task
Refactor the pedigree code to treat gene statuses more generically
Unassigned
Marta Girdea
Medium
Unresolved
Apr 29, 2019
Apr 29, 2019
Sub-task
In the administration section for the pedigree editor, add entries for specifying which top-level gene statuses have legends and, amongst those, which are shaded by default
Unassigned
Marta Girdea
Medium
Unresolved
Apr 29, 2019
Apr 29, 2019
Sub-task
Create an endpoint for the pedigree editor to read available gene statuses
Unassigned
Marta Girdea
Medium
Unresolved
Apr 29, 2019
Apr 29, 2019
Sub-task
Update the Solr schema for patient indexing to account for new gene statuses
Unassigned
Marta Girdea
Medium
Unresolved
Apr 29, 2019
Mar 2, 2021
Sub-task
Update the way gene statuses are displayed in the patient form
Unassigned
Marta Girdea
Medium
Unresolved
Apr 29, 2019
Mar 2, 2021
Task
More detailed, hierarchical gene status options
Unassigned
Marta Girdea
Medium
Unresolved
Apr 29, 2019
Mar 2, 2021
Improvement
Add links to each member of a workgroup
Unassigned
Sergiu Dumitriu
Medium
Unresolved
Apr 27, 2019
Apr 27, 2019
Improvement
Add the ability to set the livetable backend to a custom url
Unassigned
Sergiu Dumitriu
Medium
Fixed
Apr 26, 2019
Apr 26, 2019
Improvement
Allow translation files to be written in legible UTF-8 characters instead of unicode escapes
Unassigned
Sergiu Dumitriu
Medium
Fixed
Apr 26, 2019
Apr 26, 2019
Bug
Disabling life status in patient form configuration makes death date impossible to save
Unassigned
Alina Gvo
Medium
Unresolved
Apr 25, 2019
Apr 25, 2019
Bug
Deletion of gene entries where the gene name contains the character "&" fails
Unassigned
Marta Girdea
Medium
Unresolved
Apr 25, 2019
Apr 26, 2019
Improvement
Study selector dialog uses different font colour for study description when invoked from the home page
Unassigned
Sasha Andjic
Trivial
Unresolved
Apr 25, 2019
Apr 25, 2019
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