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SimpleJSON representation of pedigrees is incompatible between PhenoTips 1.3 and 1.4 when cancers are included

Description

Steps to reproduce:

  • In PhenoTips ver 1.4 create a pedigree, and add some cancers to a node

  • export pedigree into SimpleJSON format

  • Open a PhenoTips 1.3 instance and try to import the file; the import process fails; the progress bar never goes away

(the opposite also fails: create a pedigree in 1.3 and try to import it into 1.4)

Here is a sample SimpleJSON generated by 1.4 that can not be imported by 1.3.x. versions:

1 [{"id":"1","proband":true,"sex":"unknown","cancers":[{"id":"HP:0100013","label":"Breast","affected":true,"qualifiers":[{"ageAtDiagnosis":"8","laterality":"","primary":true,"notes":"breast notes","numericAgeAtDiagnosis":8}]},{"id":"HP:0030079","label":"Cervix","affected":true,"qualifiers":[{"ageAtDiagnosis":"before_10","laterality":"","primary":true,"notes":"cervix notes","numericAgeAtDiagnosis":1}]}],"features":[],"nonstandard_features":[],"genes":[]}]

The same data in 1.3 SImpleJSON that can't be imported into 1.4:

1 [{"id":"1","proband":true,"sex":"male","cancers":{"Breast":{"affected":true,"ageAtDiagnosis":"8","numericAgeAtDiagnosis":8,"notes":"breast notes"},"Cervix":{"affected":true,"ageAtDiagnosis":"before_10","numericAgeAtDiagnosis":5,"notes":"cervix notes"}},"features":[],"nonstandard_features":[],"genes":[]}]

Environment

None

Status

Assignee

Andrew Misyura

Reporter

Sasha Andjic

Labels

None

External issue ID

None

External issue ID

None

Epic Link

Components

Fix versions

Affects versions

1.4-rc-3

Priority

Medium