Uploaded image for project: 'PhenoTips'
  1. PT-3197

VocabularyManager's resolveTerm does not work as expected with GeneNomenclature terms

    Details

    • Type: Bug
    • Status: Closed
    • Priority: Medium
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 1.3-rc-4
    • Component/s: vocabularies
    • Labels:
      None

      Description

      resolveTerm(VocabularyTerm)
      

      does not work as expected with GeneNomenclature terms.

      1. Using the term as is does not work, since resolveTerm requires a vocabulary prefix.
      2. Adding HGNC: before a term does not behave as expected.

      The following 5 pairs should return the same thing, however:

      • 1.b does not work and
      • 3.b and 5.b returns the wrong term
      1.a localhost:8080/rest/vocabularies/HGNC/DANCR 1.b localhost:8080/rest/vocabularies/terms/HGNC:DANCR
      2.a. localhost:8080/rest/vocabularies/HGNC/AGU2 2.b localhost:8080/rest/vocabularies/terms/HGNC:AGU2
      3.a localhost:8080/rest/vocabularies/HGNC/ANCR 3.b localhost:8080/rest/vocabularies/terms/HGNC:ANCR
      4.a localhost:8080/rest/vocabularies/HGNC/28964 4.b localhost:8080/rest/vocabularies/terms/HGNC:28964
      5.a localhost:8080/rest/vocabularies/HGNC/ENSG00000226950 5.b localhost:8080/rest/vocabularies/terms/HGNC:ENSG00000226950

        Attachments

          Activity

            People

            • Assignee:
              sdumitriu Sergiu Dumitriu
              Reporter:
              alina Alina Gvo
            • Votes:
              0 Vote for this issue
              Watchers:
              2 Start watching this issue

              Dates

              • Created:
                Updated:
                Resolved: