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Suggested gene panels in UI differ from curl REST call

Description

For the patient record (see JSON below) gene panel suggestions show more genes.

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 { "allergies": ["NKDA"], "date": "2017-03-20T14:47:29.000Z", "apgar": {}, "notes": { "family_history": "", "prenatal_development": "", "indication_for_referral": "", "genetic_notes": "", "medical_history": "", "diagnosis_notes": "referred to gynecological surgeon to discuss option of TAHBSO" }, "ethnicity": { "maternal_ethnicity": ["Polish"], "paternal_ethnicity": ["German"] }, "date_of_birth": { "month": 10, "year": 1974, "day": 4 }, "global_mode_of_inheritance": [{ "id": "HP:0000006", "label": "Autosomal dominant inheritance" }], "solved": { "status": "solved" }, "external_id": "849365", "variants": [{ "start_position": "43124030", "evidence": ["rare", "predicted", "reported"], "gene": "ENSG00000012048", "chromosome": "17", "inheritance": "paternal", "end_position": "43124031", "transcript": "NM_007294.3", "sanger": "positive", "zygosity": "heterozygous", "interpretation": "pathogenic", "reference_genome": "GRCh38", "protein": "p.Glu23Valfs", "effect": "deletion_frameshift", "dbsnp": "rs386833395", "cdna": "c.68_69delAG", "segregation": "segregates" }], "clinicalStatus": "affected", "disorders": [{ "id": "MIM:604370", "label": "BREAST-OVARIAN CANCER, FAMILIAL, SUSCEPTIBILITY TO, 1" }], "features": [{ "id": "HP:0000256", "label": "Macrocephaly", "type": "phenotype", "observed": "no" }, { "id": "HP:0000717", "label": "Autism", "type": "phenotype", "observed": "no" }], "date_of_death": {}, "contact": [{ "institution": "http://phenotips.org/", "name": "Administrator", "id": "xwiki:XWiki.Admin", "email": "support@phenotips.org" }], "last_modification_date": "2017-03-20T14:47:31.000Z", "patient_name": { "last_name": "Barr", "first_name": "Sharon" }, "specificity": { "date": "2017-03-20T14:57:02.340Z", "score": 0.4020703333333333, "server": "monarchinitiative.org" }, "nonstandard_features": [], "id": "P0000001", "prenatal_perinatal_history": { "multipleGestation": null, "icsi": null, "maternal_age": 0, "paternal_age": 0, "ivf": null, "assistedReproduction_donoregg": null, "assistedReproduction_iui": null, "twinNumber": "", "assistedReproduction_fertilityMeds": null, "gestation": null, "assistedReproduction_surrogacy": null, "assistedReproduction_donorsperm": null }, "family_history": { "miscarriages": false, "consanguinity": false, "affectedRelatives": null }, "genes": [{ "gene": "BRCA1", "id": "ENSG00000012048", "status": "solved" }], "life_status": "alive", "sex": "F", "clinical-diagnosis": [], "reporter": "Admin", "last_modified_by": "Admin", "global_age_of_onset": [{ "id": "HP:0011462", "label": "Young adult onset" }], "report_id": "P0000001", "meta": { "hgnc_version": "2017-02-11T22:12:02.225Z", "omim_version": "2017-03-14T05:02:32.259Z", "hpo_version": "releases/2017-03-09", "orphanet_version": "2.3", "phenotips_version": "1.3-rc-1" } }

Environment

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Status

Assignee

Alina Gvo

Reporter

Sasha Andjic

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Fix versions

Priority

Medium