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Suggested gene panels in UI differ from curl REST call
Description
For the patient record (see JSON below) gene panel suggestions show more genes.
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{
"allergies": ["NKDA"],
"date": "2017-03-20T14:47:29.000Z",
"apgar": {},
"notes": {
"family_history": "",
"prenatal_development": "",
"indication_for_referral": "",
"genetic_notes": "",
"medical_history": "",
"diagnosis_notes": "referred to gynecological surgeon to discuss option of TAHBSO"
},
"ethnicity": {
"maternal_ethnicity": ["Polish"],
"paternal_ethnicity": ["German"]
},
"date_of_birth": {
"month": 10,
"year": 1974,
"day": 4
},
"global_mode_of_inheritance": [{
"id": "HP:0000006",
"label": "Autosomal dominant inheritance"
}],
"solved": {
"status": "solved"
},
"external_id": "849365",
"variants": [{
"start_position": "43124030",
"evidence": ["rare", "predicted", "reported"],
"gene": "ENSG00000012048",
"chromosome": "17",
"inheritance": "paternal",
"end_position": "43124031",
"transcript": "NM_007294.3",
"sanger": "positive",
"zygosity": "heterozygous",
"interpretation": "pathogenic",
"reference_genome": "GRCh38",
"protein": "p.Glu23Valfs",
"effect": "deletion_frameshift",
"dbsnp": "rs386833395",
"cdna": "c.68_69delAG",
"segregation": "segregates"
}],
"clinicalStatus": "affected",
"disorders": [{
"id": "MIM:604370",
"label": "BREAST-OVARIAN CANCER, FAMILIAL, SUSCEPTIBILITY TO, 1"
}],
"features": [{
"id": "HP:0000256",
"label": "Macrocephaly",
"type": "phenotype",
"observed": "no"
}, {
"id": "HP:0000717",
"label": "Autism",
"type": "phenotype",
"observed": "no"
}],
"date_of_death": {},
"contact": [{
"institution": "http://phenotips.org/",
"name": "Administrator",
"id": "xwiki:XWiki.Admin",
"email": "support@phenotips.org"
}],
"last_modification_date": "2017-03-20T14:47:31.000Z",
"patient_name": {
"last_name": "Barr",
"first_name": "Sharon"
},
"specificity": {
"date": "2017-03-20T14:57:02.340Z",
"score": 0.4020703333333333,
"server": "monarchinitiative.org"
},
"nonstandard_features": [],
"id": "P0000001",
"prenatal_perinatal_history": {
"multipleGestation": null,
"icsi": null,
"maternal_age": 0,
"paternal_age": 0,
"ivf": null,
"assistedReproduction_donoregg": null,
"assistedReproduction_iui": null,
"twinNumber": "",
"assistedReproduction_fertilityMeds": null,
"gestation": null,
"assistedReproduction_surrogacy": null,
"assistedReproduction_donorsperm": null
},
"family_history": {
"miscarriages": false,
"consanguinity": false,
"affectedRelatives": null
},
"genes": [{
"gene": "BRCA1",
"id": "ENSG00000012048",
"status": "solved"
}],
"life_status": "alive",
"sex": "F",
"clinical-diagnosis": [],
"reporter": "Admin",
"last_modified_by": "Admin",
"global_age_of_onset": [{
"id": "HP:0011462",
"label": "Young adult onset"
}],
"report_id": "P0000001",
"meta": {
"hgnc_version": "2017-02-11T22:12:02.225Z",
"omim_version": "2017-03-14T05:02:32.259Z",
"hpo_version": "releases/2017-03-09",
"orphanet_version": "2.3",
"phenotips_version": "1.3-rc-1"
}
}Environment
None
Status
Assignee
Alina Gvo
Reporter
Sasha Andjic
Labels
None
External issue ID
None
External issue ID
None
Epic Link
Fix versions
Priority
Medium