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  1. PT-3059

Variants not properly imported when doing 1.3M1 to 1.3M5 JSON import

    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 1.3-milestone-5
    • Fix Version/s: 1.3-milestone-6
    • Component/s: None
    • Labels:
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      Description

      The issue was found when importing patient https://preprod.phenomecentral.org/P0002926 to 1.3M5 instance.

      Upon import, the patient JSON contains variants, however the gene field is missing and thus variants are not showing up in UI.

      The original JSON as well as screenshots are attached.

      Please notice the difference in JSON format between M1 and M5.
      For genes we added id, so we have "gene" for for gene symbol and "id" for gene's EnsemblID.
      For variants we removed "genesymbol" and added "gene" for storing gene's EnsemblID.

        Attachments

        1. Imported record.png
          43 kB
        2. JSON after import.png
          245 kB
        3. JSON FORMAT 1.3M1 VS 1.3M5.png
          113 kB
        4. Original JSON
          1 kB
        5. Original record.png
          169 kB

          Activity

            People

            • Assignee:
              veronikaslc Veronika Koltunova
              Reporter:
              sasha Sasha Andjic
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              Dates

              • Created:
                Updated:
                Resolved: