Add chromosome, start position, end position and reference genome as fields for variants

Description

They should be the first entries in the "extended" set of fields in the following order:

  • reference genome: dropdown with:

    • stored value: GRCh38, displayed value: GRCh38 (hg38)

    • stored value: GRCh37, displayed value: GRCh37 (hg19)

    • stored value: NCBI36, displayed value: NCBI36 (hg18)

  • chromosome: 1, 2, 3,....22, X, Y

  • start position: number

  • end position: number

(see also https://github.com/phenotips/phenotips/blob/master/components/patient-data/ui/src/main/resources/PhenoTips/VCF.xml#L87)

Environment

None

Assignee

Veronika Koltunova

Reporter

Marta Girdea

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Priority

Major
Configure